header%20ipynb.png

In [3]:
import numpy as np
from sklearn.cluster import DBSCAN
from sklearn import metrics
from sklearn.datasets import make_blobs
from sklearn.preprocessing import StandardScaler

# Generate sample data
centers = [[1, 1], [-1, -1], [1, -1]]
X, labels_true = make_blobs(n_samples=750, centers=centers, cluster_std=0.4,
                            random_state=0)

X = StandardScaler().fit_transform(X)

# Compute DBSCAN
db = DBSCAN(eps=0.3, min_samples=10).fit(X)
core_samples_mask = np.zeros_like(db.labels_, dtype=bool)
core_samples_mask[db.core_sample_indices_] = True
labels = db.labels_

# Number of clusters in labels, ignoring noise if present.
n_clusters_ = len(set(labels)) - (1 if -1 in labels else 0)
n_noise_ = list(labels).count(-1)
In [4]:
import numpy as np
import matplotlib.pyplot as plt
from sklearn import metrics
from sklearn.datasets import make_circles
from sklearn.preprocessing import StandardScaler
from sklearn.cluster import DBSCAN
X, y = make_circles(n_samples=750, factor=0.3, noise=0.1)
X = StandardScaler().fit_transform(X)
y_pred = DBSCAN(eps=0.3, min_samples=10).fit_predict(X)

plt.scatter(X[:,0], X[:,1], c=y_pred)
print('Number of clusters: {}'.format(len(set(y_pred[np.where(y_pred != -1)]))))
print('Homogeneity: {}'.format(metrics.homogeneity_score(y, y_pred)))
print('Completeness: {}'.format(metrics.completeness_score(y, y_pred)))
print("V-measure: %0.3f" % metrics.v_measure_score(labels_true, labels))
print("Adjusted Rand Index: %0.3f"
      % metrics.adjusted_rand_score(labels_true, labels))
print("Adjusted Mutual Information: %0.3f"
      % metrics.adjusted_mutual_info_score(labels_true, labels))
print("Silhouette Coefficient: %0.3f"
      % metrics.silhouette_score(X, labels))
Number of clusters: 2
Homogeneity: 1.0
Completeness: 0.924494011741168
V-measure: 0.917
Adjusted Rand Index: 0.952
Adjusted Mutual Information: 0.916
Silhouette Coefficient: -0.056
In [ ]: